Enzyme
A biological catalyst (almost always a protein) that speeds up a reaction by lowering the activation energy, without being consumed.
Enzymes
Substrate
The specific molecule(s) that an enzyme acts on. The enzyme's active site is shaped to bind its substrate.
Enzymes
Active site
The region of the enzyme where the substrate binds. Its precise 3D shape determines which substrate(s) the enzyme can act on.
Enzymes
Induced fit
The model that an enzyme's active site changes shape slightly when the substrate binds, gripping the substrate and positioning it for the reaction.
Enzymes
Activation energy (Eₐ)
The minimum energy required for a reaction to proceed. Enzymes lower it — that's how they speed reactions up without changing whether the reaction is favorable overall.
Enzymes
Catalyst
A substance that speeds up a reaction without being consumed. Enzymes are biological catalysts.
Enzymes
Competitive inhibitor
A molecule that resembles the substrate and binds to the active site, blocking the real substrate. Effect can be reduced by adding more substrate.
Enzymes
Noncompetitive (allosteric) inhibitor
A molecule that binds to a site other than the active site, changing the enzyme's shape and reducing its activity. Cannot be overcome with more substrate.
Enzymes
Allosteric regulation
Regulation of an enzyme by a molecule binding to a site other than the active site, often shifting the enzyme between active and inactive forms.
Enzymes
Denaturation
Loss of an enzyme's 3D shape from extreme heat, pH, or chemicals. Disrupts the active site and eliminates activity.
Enzymes
Optimal temperature / pH
The temperature and pH at which an enzyme works fastest. Beyond this range, activity drops sharply as the enzyme begins to denature.
Enzymes
ATP (adenosine triphosphate)
The cell's universal energy currency. Energy is stored in the bonds between its phosphate groups; hydrolysis of the last phosphate releases usable energy.
ATP & Energy
ADP (adenosine diphosphate)
The product of ATP hydrolysis. ADP can be re-phosphorylated to ATP using energy from cellular respiration or photosynthesis.
ATP & Energy
ATP hydrolysis
The reaction ATP + H₂O → ADP + Pᵢ, which releases energy that powers cellular work. This is the most common energy-releasing reaction in cells.
ATP & Energy
Endergonic reaction
A reaction that REQUIRES energy (positive ΔG); products are higher in energy than reactants. Building biomolecules is endergonic.
ATP & Energy
Exergonic reaction
A reaction that RELEASES energy (negative ΔG); products are lower in energy than reactants. ATP hydrolysis is exergonic.
ATP & Energy
Coupled reaction
Pairing an exergonic reaction (often ATP hydrolysis) with an endergonic reaction so the released energy drives the energy-requiring step.
ATP & Energy
Photosynthesis
The process by which plants, algae, and some bacteria use light energy to convert CO₂ and H₂O into glucose and O₂. Overall: 6 CO₂ + 6 H₂O + light → C₆H₁₂O₆ + 6 O₂.
Photosynthesis
Chlorophyll
The green pigment in chloroplasts that absorbs light energy (mainly red and blue wavelengths) to drive the light reactions of photosynthesis.
Photosynthesis
Thylakoid
Flattened membrane sac inside the chloroplast where the light reactions take place. Stacks of thylakoids are called grana.
Photosynthesis
Stroma
The fluid-filled space inside the chloroplast (outside the thylakoids) where the Calvin cycle takes place.
Photosynthesis
Light reactions
The light-dependent stage of photosynthesis (in thylakoid membranes). Light energizes electrons from H₂O; electrons travel down the thylakoid ETC, pumping H⁺ into the thylakoid; H⁺ flows out through ATP synthase. Products: ATP, NADPH, O₂.
Photosynthesis
Calvin cycle
The light-INDEPENDENT stage of photosynthesis (in stroma). Uses ATP and NADPH from the light reactions to fix CO₂ into G3P, which becomes glucose.
Photosynthesis
Rubisco
The enzyme that catalyzes the first step of the Calvin cycle — attaching CO₂ to RuBP. The most abundant protein on Earth.
Photosynthesis
NADPH
An electron carrier produced by the light reactions. Donates electrons to the Calvin cycle to reduce CO₂ into glucose.
Photosynthesis
Cellular respiration
The process by which cells break down glucose using oxygen to produce ATP, CO₂, and H₂O. Overall: C₆H₁₂O₆ + 6 O₂ → 6 CO₂ + 6 H₂O + ~30–32 ATP.
Cellular Respiration
Glycolysis
The first stage of cellular respiration, in the cytoplasm. Glucose (6C) is split into 2 pyruvate (3C each), producing a net 2 ATP and 2 NADH. Does not require oxygen.
Cellular Respiration
Pyruvate oxidation
The transition step between glycolysis and the Krebs cycle. Pyruvate is converted to acetyl-CoA in the mitochondrial matrix, releasing CO₂ and producing NADH.
Cellular Respiration
Krebs cycle (citric acid cycle)
In the mitochondrial matrix. Acetyl-CoA is fully oxidized to CO₂, producing 3 NADH, 1 FADH₂, and 1 ATP per cycle (twice per glucose).
Cellular Respiration
NADH / FADH₂
Electron carriers that pick up high-energy electrons during glycolysis, pyruvate oxidation, and Krebs cycle. Donate electrons to the electron transport chain.
Cellular Respiration
Electron transport chain (ETC)
A series of proteins in the inner mitochondrial membrane that pass electrons from NADH and FADH₂ down an energy gradient. Energy released pumps H⁺ into the intermembrane space.
Cellular Respiration
Chemiosmosis
The flow of H⁺ back across a membrane through ATP synthase, down its electrochemical gradient. The flow drives ATP synthesis.
Cellular Respiration
ATP synthase
The enzyme embedded in the inner mitochondrial membrane (and thylakoid membrane) that uses the flow of H⁺ down its gradient to attach phosphate to ADP, making ATP.
Cellular Respiration
Oxidative phosphorylation
The combined process of the electron transport chain plus chemiosmosis. Generates the majority of ATP in cellular respiration (~26 of ~30–32 per glucose).
Cellular Respiration
Final electron acceptor
Oxygen, at the end of the mitochondrial ETC. O₂ picks up electrons and H⁺, forming water. Without O₂, the chain backs up and stops.
Cellular Respiration
Proton (H⁺) gradient
The buildup of H⁺ ions on one side of a membrane (intermembrane space in mitochondria; thylakoid lumen in chloroplasts). Powers ATP synthase via chemiosmosis.
Cellular Respiration
Substrate-level phosphorylation
The direct transfer of a phosphate group from a substrate to ADP, producing ATP. Happens in glycolysis and the Krebs cycle (a small fraction of total ATP).
Cellular Respiration
Fermentation
Anaerobic ATP production via glycolysis alone. Pyruvate is converted to lactate or ethanol just to regenerate NAD⁺ so glycolysis can continue. Yields only 2 ATP per glucose.
Fermentation
Lactic acid fermentation
Pyruvate → lactate, with the regeneration of NAD⁺. Used by animal muscle cells during intense exercise and by many bacteria.
Fermentation
Alcoholic fermentation
Pyruvate → ethanol + CO₂, with the regeneration of NAD⁺. Used by yeast (the basis of brewing and baking) and some bacteria.
Fermentation
Anaerobic vs. aerobic
Anaerobic = without oxygen (fermentation and glycolysis alone). Aerobic = with oxygen (full cellular respiration through the ETC). Aerobic produces much more ATP per glucose.
Fermentation